Caleydo makes use of a range of open source tools, bioinformatics resources and pre-packages several datasets, which we gratefully acknowledge here.
- Bubble Sets - A Java implementation of the visualization technique.
- CDK - The Chemistry Development Kit.
- JGrahT - A graph library.
- Jogl - Java bindings for OpenGL.
- PathVisio - loading and parsing WikiPathways.
- WordHoard - statistical utilities.